Inference of Transmission Tree from a Dated Phylogeny
Statistical Exploration of Landscapes of Phylogenetic Trees
An R package which provides tools for calculating and viewing topological properties of phylogenetic trees.
An R package for inferring and viewing transmission clusters from sequence alignments and sample dates.
Tansmission inference using SNP data
An R package that provides functionality for creation and comparison of polynomials that uniquely describe trees.
Compare tree shapes using integer labels: an R package.